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Inferring Outcome Means of Exponential Family Distributions Estimated by Deep Neural Networks

arXiv.org Machine Learning

While deep neural networks (DNNs) are widely used for prediction, inference on DNN-estimated subject-specific means for categorical or exponential family outcomes remains underexplored. We address this by proposing a DNN estimator under generalized nonparametric regression models (GNRMs) and developing a rigorous inference framework. Unlike existing approaches that assume independence between prediction errors and inputs to establish the error bound, a condition often violated in GNRMs, we allow for dependence and our theoretical analysis demonstrates the feasibility of drawing inference under GNRMs. To implement inference, we consider an Ensemble Subsampling Method (ESM) that leverages U-statistics and the Hoeffding decomposition to construct reliable confidence intervals for DNN estimates. We show that, under GNRM settings, ESM enables model-free variance estimation and accounts for heterogeneity among individuals in the population. Through simulations under nonparametric logistic, Poisson, and binomial regression models, we demonstrate the effectiveness and efficiency of our method. We further apply the method to the electronic Intensive Care Unit (eICU) dataset, a large-scale collection of anonymized health records from ICU patients, to predict ICU readmission risk and offer patient-centric insights for clinical decision-making.


Bayesian Semi-Parametric Spatial Dispersed Count Model for Precipitation Analysis

arXiv.org Machine Learning

The appropriateness of the Poisson model is frequently challenged when examining spatial count data marked by unbalanced distributions, over-dispersion, or under-dispersion. Moreover, traditional parametric models may inadequately capture the relationships among variables when covariates display ambiguous functional forms or when spatial patterns are intricate and indeterminate. To tackle these issues, we propose an innovative Bayesian hierarchical modeling system. This method combines non-parametric techniques with an adapted dispersed count model based on renewal theory, facilitating the effective management of unequal dispersion, non-linear correlations, and complex geographic dependencies in count data. We illustrate the efficacy of our strategy by applying it to lung and bronchus cancer mortality data from Iowa, emphasizing environmental and demographic factors like ozone concentrations, PM2.5, green space, and asthma prevalence. Our analysis demonstrates considerable regional heterogeneity and non-linear relationships, providing important insights into the impact of environmental and health-related factors on cancer death rates. This application highlights the significance of our methodology in public health research, where precise modeling and forecasting are essential for guiding policy and intervention efforts. Additionally, we performed a simulation study to assess the resilience and accuracy of the suggested method, validating its superiority in managing dispersion and capturing intricate spatial patterns relative to conventional methods. The suggested framework presents a flexible and robust instrument for geographical count analysis, offering innovative insights for academics and practitioners in disciplines such as epidemiology, environmental science, and spatial statistics.


Data subsampling for Poisson regression with pth-root-link

arXiv.org Machine Learning

We develop and analyze data subsampling techniques for Poisson regression, the standard model for count data $y\in\mathbb{N}$. In particular, we consider the Poisson generalized linear model with ID- and square root-link functions. We consider the method of coresets, which are small weighted subsets that approximate the loss function of Poisson regression up to a factor of $1\pm\varepsilon$. We show $\Omega(n)$ lower bounds against coresets for Poisson regression that continue to hold against arbitrary data reduction techniques up to logarithmic factors. By introducing a novel complexity parameter and a domain shifting approach, we show that sublinear coresets with $1\pm\varepsilon$ approximation guarantee exist when the complexity parameter is small. In particular, the dependence on the number of input points can be reduced to polylogarithmic. We show that the dependence on other input parameters can also be bounded sublinearly, though not always logarithmically. In particular, we show that the square root-link admits an $O(\log(y_{\max}))$ dependence, where $y_{\max}$ denotes the largest count presented in the data, while the ID-link requires a $\Theta(\sqrt{y_{\max}/\log(y_{\max})})$ dependence. As an auxiliary result for proving the tightness of the bound with respect to $y_{\max}$ in the case of the ID-link, we show an improved bound on the principal branch of the Lambert $W_0$ function, which may be of independent interest. We further show the limitations of our analysis when $p$th degree root-link functions for $p\geq 3$ are considered, which indicate that other analytical or computational methods would be required if such a generalization is even possible.


Negative Binomial Matrix Completion

arXiv.org Artificial Intelligence

Matrix completion focuses on recovering missing or incomplete information in matrices. This problem arises in various applications, including image processing and network analysis. Previous research proposed Poisson matrix completion for count data with noise that follows a Poisson distribution, which assumes that the mean and variance are equal. Since overdispersed count data, whose variance is greater than the mean, is more likely to occur in realistic settings, we assume that the noise follows the negative binomial (NB) distribution, which can be more general than the Poisson distribution. In this paper, we introduce NB matrix completion by proposing a nuclear-norm regularized model that can be solved by proximal gradient descent. In our experiments, we demonstrate that the NB model outperforms Poisson matrix completion in various noise and missing data settings on real data.


Fully Bayesian inference for neural models with negative-binomial spiking

Neural Information Processing Systems

Characterizing the information carried by neural populations in the brain requires accurate statistical models of neural spike responses. The negative-binomial distribution provides a convenient model for over-dispersed spike counts, that is, responses with greater-than-Poisson variability. Here we describe a powerful data-augmentation framework for fully Bayesian inference in neural models with negative-binomial spiking. Our approach relies on a recently described latentvariable representation of the negative-binomial distribution, which equates it to a Polya-gamma mixture of normals. This framework provides a tractable, conditionally Gaussian representation of the posterior that can be used to design efficient EM and Gibbs sampling based algorithms for inference in regression and dynamic factor models. We apply the model to neural data from primate retina and show that it substantially outperforms Poisson regression on held-out data, and reveals latent structure underlying spike count correlations in simultaneously recorded spike trains.